Features

AMRnet provides a comprehensive suite of features designed to make antimicrobial resistance (AMR) genomic surveillance data accessible and actionable for researchers, public health professionals, and policymakers worldwide.

Interactive Visualizations

🗺️ Interactive Global Maps

  • Visualize resistance patterns across countries and regions

  • Color-coded prevalence data with geographic distribution

  • Clickable countries for detailed filtering

  • Export capabilities for static maps (PNG format)

  • Responsive design that works on all devices

📊 Dynamic Trend Analysis

  • Track resistance changes over time with interactive graphs

  • Multiple chart types: line charts, bar charts, and scatter plots

  • Temporal filtering by year, month, or custom date ranges

  • Real-time data updates as filters are applied

  • Downloadable chart data and static images

🔍 Advanced Data Exploration

  • Multi-dimensional filtering by organism, drug, genotype, and geography

  • Dynamic legends with click-to-filter functionality

  • Cross-chart filtering that updates all visualizations simultaneously

  • Custom aggregation options (counts vs. percentages)

  • Real-time data validation and error handling

Supported Organisms

🦠 Comprehensive Pathogen Coverage

AMRnet supports surveillance data for eight major pathogens:

  • Salmonella Typhi (S. Typhi) - Typhoid fever surveillance with H58 lineage tracking

  • Klebsiella pneumoniae (K. pneumoniae) - Healthcare-associated infections and carbapenemase monitoring

  • Neisseria gonorrhoeae (N. gonorrhoeae) - Gonorrhea resistance monitoring with WHO surveillance data

  • Escherichia coli (E. coli) - ESBL and carbapenemase tracking, STEC surveillance

  • Diarrheagenic E. coli (dEcoli) - Specialized diarrheal disease surveillance

  • Shigella (Shigella spp.) - Dysentery and MDR monitoring with serotype tracking

  • Salmonella enterica (S. enterica) - Non-typhoidal Salmonella surveillance

  • Salmonella enterica INTS - Invasive non-typhoidal Salmonella tracking

Internationalization

🌍 Multi-Language Support

  • English (Default) - Comprehensive interface language

  • French - Professional French translations with proper terminology

  • Portuguese (Brazil) - Brazilian Portuguese with local conventions

  • Spanish - International Spanish translations

  • Visual flag-based language switcher

  • Persistent language selection across sessions

  • Right-to-left language support ready

User Experience

📱 Responsive Design

  • Optimized for desktop, tablet, and mobile devices

  • Touch-friendly interface for mobile users

  • Adaptive layouts that work across screen sizes

  • Progressive web app capabilities

  • Offline data caching for improved performance

🚀 Performance Optimization

  • Lazy loading of data and components

  • Intelligent caching to reduce server load

  • Compressed data transfer (up to 96% size reduction)

  • Parallel data loading for faster initial page loads

  • Background processing for large datasets

Data Access & Export

📁 Flexible Data Export

  • Download filtered datasets in CSV format

  • Export static visualizations (PNG, SVG)

  • Generate PDF reports with current dashboard state

  • Custom data selection with field-level control

  • Batch export capabilities for multiple organisms

🔌 API Access

  • RESTful API with comprehensive documentation

  • Programmatic access to all dashboard data

  • Rate limiting and authentication for production use

  • OpenAPI/Swagger documentation

  • SDK libraries for common programming languages

Advanced Features

🔬 Scientific Analysis Tools

  • Statistical trend analysis with confidence intervals

  • Geographic clustering and hotspot identification

  • Phylogenetic data integration where available

  • Resistance mechanism tracking (genotypic vs. phenotypic)

  • Outbreak detection and monitoring capabilities

🛡️ Data Quality & Security

  • Comprehensive data validation and quality checks

  • Secure data transmission with HTTPS encryption

  • User authentication and authorization

  • Audit logging for data access and modifications

  • Privacy-compliant data handling procedures

🔄 Real-time Updates

  • Automatic data synchronization from surveillance networks

  • Version control for datasets with change tracking

  • Notification system for data updates

  • Backward compatibility for historical data access

  • Data provenance tracking and metadata management

Integration Capabilities

🌐 External System Integration

  • NCBI pathogen database connectivity

  • WHO surveillance network integration

  • ECDC/CDC data pipeline compatibility

  • Laboratory information system (LIS) connectors

  • Automated data validation and quality scoring

📊 Analytics & Reporting

  • Customizable dashboard views for different user types

  • Automated report generation with scheduling

  • Key performance indicator (KPI) tracking

  • Comparative analysis between regions and time periods

  • Statistical significance testing for trend analysis